U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ERX609213: AB SOLiD System 3.0 sequencing
1 ABI_SOLID (AB SOLiD System 3.0) run: 32.8M spots, 1.1G bases, 889.3Mb downloads

Design: size fractionated total RNA
Submitted by: MDC
Study: Quantification of miRNA expression in heart and liver tissue of BN-Lx and SHR/Ola rats
show Abstracthide Abstract
Aim of the study was to quantify the miRNA expression in heart and liver tissue of BN-Lx and SHR/Ola rats. We assessed the expression of 680 annotated mature miRNAs. We performed a quantile based scaling to normalize read counts. Normalized miRNA counts were then compared between BN-Lx and SHR/Ola using a generalized linear model with the quasi-Poisson family object. The false discovery rate was controlled using the Benjamini-Hochberg procedure. To test for differential miRNA expression, we analyzed 3 (liver) and 4 (heart) biological replicates of each strain
Sample: SHR-02_miRNA_heart
SAMEA2812702 • ERS565098 • All experiments • All runs
Library:
Name: unspecified
Instrument: AB SOLiD System 3.0
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: To enrich for 15-35bp small RNAs, 10 microgram total RNA was purified on 15% denaturing PAA gel (7 M Urea). Small RNA libraries were prepared with the SOLiD Total RNA-Seq Kit (Life Technologies) following the manufacturers guidelines. After adapter ligation, cDNA was purified with MinElute PCR Purification Kit (Qiagen) and size selected on a 10% TBE-Urea gel. cDNA fragments were then amplified with 15 (heart) or 17 (liver) PCR cycles using barcoded primers. Size and quantity of the final cDNA libraries were assessed with the DNA 1000 Kit (Agilent) and sequencing was carried out on a SOLiD 3 system.
Runs: 1 run, 32.8M spots, 1.1G bases, 889.3Mb
Run# of Spots# of BasesSizePublished
ERR65285932,808,7941.1G889.3Mb2015-06-04

ID:
1524121

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...